Publications

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Computational analysis of ncRNA involved in cancer development and memory formation (PDF – 124MB)

Jesper LV Maag (2017). Doctoral dissertation.

CCR6 Defines Memory B Cell Precursors in Mouse and Human Germinal Centers, Revealing Light-Zone Location and Predominant Low Antigen Affinity

Dan Suan, Nike J Kräutler, Jesper LV Maag, Danyal Butt, Katherine Bourne, Jana R Hermes, Danielle T Avery, Clara Young, Aaron Statham, Michael Elliott, Marcel E Dinger, Antony Basten, Stuart G Tangye, Robert Brink (2017). Immunity, 47: 1142–1153.

Novel Aberrations Uncovered in Barrett’s Esophagus and Esophageal Adenocarcinoma Using Whole Transcriptome Sequencing

Jesper LV Maag and Oliver M Fisher, Angelique J Levert-Mignon, Dominik C Kaczorowski, Melissa L Thomas, Damian Hussey, David, Watson, Antony Wettstein, Yuri V Bobryshev, Melanie Edwards, Marcel E Dinger and Reginald V Lord (2017). Molecular Cancer Research, 5: 11.

Widespread promoter methylation of synaptic plasticity genes in long-term potentiation in the adult brain in vivo

Jesper LV Maag, Dominik C Kaczorowski, Debabrata Panja, Timothy J Peters, Clive R Bramham, Karin Wibrand, Marcel E Dinger (2017). BMC Genomics, 18: (1) 250.

Intergenic disease-associated regions are abundant in novel transcripts.

Nenad Bartonicek, Mike B Clark Xiu Cheng Quek, James Torpy, Antonia L Pritchard, Jesper LV Maag, Brian S Gloss, Joanna Crawford, Ryan J Taft, Nicholas K Hayward, Grant W Montgomery, John S Mattick, Tim R Mercer, Marcel E Dinger (2017). Genome Biology, 18: 241.

Dynamic expression of long noncoding RNAs and repeat elements in synaptic plasticity

Jesper LV Maag, Debabrata Panja, Ida Sporild, Sudarshan Patil, Dominik C Kaczorowski, Clive R Bramham, Marcel E Dinger, Karin Wibrand (2015). Frontiers in Neuroscience, 9: 351.

Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data

Celine Everaert, Manuel Luypaert, Jesper LV Maag, Quek Xiu Cheng, Marcel E Dinger, Jan Hellemans, Pieter Mestdagh (2017). Scientific Reports, 7.

The long non-coding RNA NEAT1 is responsive to neuronal activity and is associated with hyperexcitability states

Guy Barry, James A Briggs, Sam P Nayler Do Won Hwang, Patrick RJ Fortuna, Nicky Jonkhout, Fabien Dachet, Jesper LV Maag, Pieter Mestdagh, Erin M Singh, Lotta Avesson, Dominik C Kaczorowski, Ezgi Ozturk, Nigel C Jones, Irina Vetter, Luis Arriola-Martinez, Jianfei Hu, Gloria R Franco, Victoria M Warn, Andrew Gong, Marcel E Dinger, Frank Rigo, Leonard Lipovich, Margaret J Morris, Terence J O’Brien, Dong Soo Lee, Jeffrey A Loeb, Seth Blackshaw, John S Mattick, Ernst J Wolvetang (2017). Scientific Reports, 7.

CD151 Gene and Protein Expression Provides Independent Prognostic Information for Patients with Adenocarcinoma of the Esophagus and Gastroesophageal Junction Treated by Esophagectomy

Oliver M Fisher, Angelique J Levert-Mignon, Christopher W Lehane, Natalia K Botelho, Jesper LV Maag, Melissa L Thomas, Melanie Edwards, Sarah J Lord, Yuri V Bobryshev, David C Whiteman, Reginald V Lord (2016). Annals of surgical oncology, 23: (5) 745-754.

Long noncoding RNAs in cancer: mechanisms of action and technological advancements

Nenad Bartonicek and Jesper LV Maag , Marcel E Dinger (2016). Molecular Cancer, 15: (1) 43.

lncRNAdb v2. 0: expanding the reference database for functional long noncoding RNAss

Xiu Cheng Quek, Daniel W Thomson, Jesper LV Maag, Nenad Bartonicek, Bethany Signal, Michael B Clark, Brian S Gloss, Marcel E Dinger (2014). Nucleic acids research, 43: (D1) 168-173.